SANSparallel specifications

Information


Unique identifier OMICS_08001
Name SANSparallel
Interface Web user interface
Restrictions to use None
Input data Protein sequences
Input format FASTA
Output data The output is a list, pairwise alignment or stacked alignment of sequence-similar proteins from Uniprot, UniRef90/50, Swissprot or Protein Data Bank. The stacked alignments are viewed in Jalview or as sequence logos.
Parallelization MPI
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Liisa Holm <>

SANSparallel article

SANSparallel citation

2016
PMCID: 5007774

[…] were identified from the l. acidophilus ncfm genome (3) (ncbi accession number nc_006814). homologous sequences were identified and compared using the blastn and blastp features of ncbi, as well as sansparallel (34). signal peptidase cleavage sites for protein sequences were predicted using signalp 4.1 (35). protein domains were identified using uniprot and the pfam protein family database (36, […]

SANSparallel institution(s)
Institute of Biotechnology, University of Helsinki, Finland
SANSparallel funding source(s)
Biocenter Finland

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