SANTA statistics

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Associated diseases

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SANTA specifications


Unique identifier OMICS_12237
Alternative name Spatial Analysis of Network Associations
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.18.0
Stability Stable
BiocGenerics, snow, Matrix, R(>=2.14), RUnit, knitr, org.Sc.sgd.db, igraph, msm, BioNet, knitcitations, formatR, DLBCL
Maintained Yes



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  • person_outline Florian Markowetz <>

Publication for Spatial Analysis of Network Associations

SANTA in publication

PMCID: 4471934
PMID: 26087699
DOI: 10.1186/s13059-015-0675-4

[…] fig. , ).fig. 3, to systematically test for network functional enrichment and to directly compare network functional enrichment across the three epithelial-stromal co-expression networks, we used the spatial analysis of network associations (santa) method, which statistically tests the association between a query geneset and a network, enabling the functional annotation of networks []. to perform […]

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SANTA institution(s)
Department of Life Sciences, Imperial College London, London, UK; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, Cambridgeshire, UK
SANTA funding source(s)
We would like to acknowledge the support of The University of Cambridge, Cancer Research UK, and Hutchison Whampoa Limited.

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