SARNAclust specifications

Unique identifier:
OMICS_17761
Interface:
Command line interface
Input data:
A set of sequence/structures each composed of three lines: fasta comment, sequence and secondary structure.
Programming languages:
Python
Computer skills:
Advanced
Requirements:
NetworkX, EDeN, sklearn, matplotlib, forgi, Biotools, ClustalW
Software type:
Package/Module
Restrictions to use:
None
Input format:
An extended fasta file.
License:
Apache License version 2.0
Stability:
Stable
Maintained:
Yes

versioning

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SARNAclust distribution

download

SARNAclust support

Documentation

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Credits

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Publications

Institution(s)

The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA; University of Connecticut Health Center, Farmington, CT, USA; Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM) – Pompeu Fabra University (UPF), Barcelona, Spain; Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain

Funding source(s)

Supported by NIH grants R21 HG007554 and R01 NS094637, the MINECO and FEDER (BIO2014-52566-R), AGAUR (SGR2014-1121), and the Sandra Ibarra Foundation for Cancer (FSI2013).

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