SARNAclust specifications

Information


Unique identifier OMICS_17761
Name SARNAclust
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of sequence/structures each composed of three lines: fasta comment, sequence and secondary structure.
Input format An extended fasta file.
Programming languages Python
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Requirements NetworkX, EDeN, sklearn, matplotlib, forgi, Biotools, ClustalW
Maintained Yes

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Documentation


SARNAclust article

SARNAclust institution(s)
The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA; University of Connecticut Health Center, Farmington, CT, USA; Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM) – Pompeu Fabra University (UPF), Barcelona, Spain; Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain
SARNAclust funding source(s)
Supported by NIH grants R21 HG007554 and R01 NS094637, the MINECO and FEDER (BIO2014-52566-R), AGAUR (SGR2014-1121), and the Sandra Ibarra Foundation for Cancer (FSI2013).

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