SARpred statistics

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SARpred specifications

Information


Unique identifier OMICS_06649
Name SARpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_06649
Name SARpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SARpred

SARpred in publications

 (3)
PMCID: 5259910
PMID: 28155647
DOI: 10.1186/s12859-016-1368-z

[…] from the original paper, to compare the predictive models of amino acid residues, the test dataset was also processed using several rsa predictors, including spine x [], sable [], rvp-net [], and sarpred []. the test results are presented in table . rsa predictors for ala, asp, asn, glu, gln, gly, ile, leu, ser, and tyr showed better performance than the predictors corresponding […]

PMCID: 3695939
PMID: 23840574
DOI: 10.1371/journal.pone.0067008

[…] surface area (asa) is the surface area of a protein that is accessible to another protein or ligand. the predicted average accessible surface area values of each amino acid were calculated from sarpred ., based on the understanding that the glycosylation (especially o-glycosylation) may occur preferentially at surface accessible or exposed regions/residues in a protein and that it may also […]

PMCID: 3577447
PMID: 23387468
DOI: 10.1186/1471-2105-14-44

[…] predicting these pockets is therefore important. for these predictions, it is required to firstly predict the surface accessibility (sa) of each residue from the protein sequence. therefore, we used sarpred method [] for the prediction of surface accessibility of all residues. on the basis of these surface accessibility values, we tried to develop svm-based models but as shown in the additional […]


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SARpred institution(s)
Institute of Microbial Technology, Chandigarh, India

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