SARpred statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SARpred
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Tool usage distribution map

This map represents all the scientific publications referring to SARpred per scientific context
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SARpred specifications

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Unique identifier OMICS_06649
Name SARpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_06649
Name SARpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SARpred

SARpred citations

 (3)
library_books

A hydrophobic spine stabilizes a surface exposed α helix according to analysis of the solvent accessible surface area

2016
BMC Bioinformatics
PMCID: 5259910
PMID: 28155647
DOI: 10.1186/s12859-016-1368-z

[…] ich are based on Barton502). To compare the predictive models of amino acid residues, the test dataset was also processed using several RSA predictors, including SPINE X [], SABLE [], RVP-net [], and SARpred []. The test results are presented in Table . RSA predictors for Ala, Asp, Asn, Glu, Gln, Gly, Ile, Leu, Ser, and Tyr showed better performance than the predictors corresponding to the other a […]

library_books

In silico Platform for Prediction of N , O and C Glycosites in Eukaryotic Protein Sequences

2013
PLoS One
PMCID: 3695939
PMID: 23840574
DOI: 10.1371/journal.pone.0067008

[…] sible surface area (ASA) is the surface area of a protein that is accessible to another protein or ligand. The predicted average accessible surface area values of each amino acid were calculated from sarpred .Based on the understanding that the glycosylation (especially O-glycosylation) may occur preferentially at surface accessible or exposed regions/residues in a protein and that it may also be […]

library_books

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information

2013
BMC Bioinformatics
PMCID: 3577447
PMID: 23387468
DOI: 10.1186/1471-2105-14-44

[…] predicting these pockets is therefore important. For these predictions, it is required to firstly predict the surface accessibility (SA) of each residue from the protein sequence. Therefore, we used SARpred method [] for the prediction of surface accessibility of all residues. On the basis of these surface accessibility values, we tried to develop SVM-based models but as shown in the Additional f […]


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SARpred institution(s)
Institute of Microbial Technology, Chandigarh, India

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