A quantitative visualization of aligned RNA-Seq reads that enables quantitative comparison of exon usage across samples or experimental conditions. Sashimi plots can be made using the Broad Integrated Genome Viewer (IGV) or with a stand-alone command line program.
Department of Brain and Cognitive Sciences, MIT, Cambridge, MA, USA; Department of Biology, MIT, Cambridge, MA, USA; The Broad Institute of Harvard, MIT, Cambridge, MA, USA; Department of Statistics, Harvard University, Cambridge, MA, USA; Department of Biological Engineering, MIT, Cambridge, MA, USA
Sashimi plots funding source(s)
This work was supported by grant R01 CA-157304 (NIH/NCI) and Starr Cancer Consortium, R01 GM-096193 (NIGMS), IIS-1149662 (NSF), Alfred P. Sloan research fellowship, R01 GM-085319 (NIGMS), U01 CA-184897 (NCI) and R01 HG-002439 (NHGRI).