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SASITA specifications

Information


Unique identifier OMICS_20742
Name SASITA
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License CeCILL version 2.1
Computer skills Advanced
Version 1.0.3
Stability Stable
Source code URL http://sasita.gforge.inria.fr/downloads/sasita_src_1.0.3.tar.bz2
Maintained Yes

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Versioning


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Maintainer


  • person_outline Marie‑France Sagot <>

Publication for SASITA

SASITA citation

library_books

Analysis of Piscirickettsia salmonis Metabolism Using Genome Scale Reconstruction, Modeling, and Testing

2017
PMCID: 5732189
PMID: 29321769
DOI: 10.3389/fmicb.2017.02462

[…] python package cobrapy () and the gurobi solver. coupled and blocked reactions were determined using the flux coupling tool f2c2 (). to propose nutrients required for growth of p. salmonis the tool sasita () was used. given a metabolic model, sasita determines minimal sets of precursor compounds (psets) from a given universe of compounds required to produce a set of target compounds. […]


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SASITA institution(s)
Erable team, INRIA Grenoble Rhône-Alpes, Montbonnot Saint Martin, France; UMR CNRS 5558, LBBE, “Biométrie et Biologie évolutive”, Université Lyon 1, Villeurbanne, France; Center for Mathematical Modeling (UMI 2807 CNRS), University of Chile, Santiago de Chile, Chile; Sapienza University of Rome, Rome, Italy; Applied Research Department, Tecsinapse, São Paulo, Brazil; CWI, Amsterdam, Netherlands; Vrije Universiteit Amsterdam, Amsterdam, Netherlands
SASITA funding source(s)
Supported by CNPq/Brasil, Fondecyt 1140631, CIRIC-INRIA Chile, FONDAP Center for Genome Regulation, and a grant from the European Research Council under the European Community’s Seventh Framework Programme (FP7/2007-2013)/ERC Grant Agreement No [247073]10 SISYPHE.

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