SASpy specifications

Information


Unique identifier OMICS_11304
Name SASpy
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License Apache License version 2.0
Computer skills Medium
Stability Stable
Requirements
PyMOL, ATSAS
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Alejandro Panjkovich <>

Publication for SASpy

SASpy in publications

 (2)
PMCID: 5892573
PMID: 29475945
DOI: 10.1074/jbc.RA118.001941

[…] damfilt to produce a refined model revealing only the most common structural features. high-resolution models were superimposed onto low-resolution dummy atom models using supalm () as part of the saspy () plugin for pymol ()., rigid body modeling was carried out using software from the imp (integrative modeling platform) suite () and the atsas suite. a pool of 10,000 conformational samples […]

PMCID: 5727386
PMID: 29235475
DOI: 10.1038/s41467-017-02313-6

[…] the inter-domain flexibility of the dh–ph domain. the scattering curves from the high-resolution models were calculated using crysol. saxs figures were prepared using pymol (www.pymol.org) and saspy., sequence and secondary structure analysis relied on webservers for blast (blast.ncbi.nlm.nih.gov), psipred (bioinf.cs.ucl.ac.uk/psipred) and hhpred (toolkit.tuebingen.mpg.de/#/tools/hhpred)–. […]


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SASpy institution(s)
European Molecular Biology Laboratory, Hamburg Outstation, EMBL C/O DESY, Hamburg, Germany
SASpy funding source(s)
This work was supported by the European Commission, BioStruct-X grant 283570.

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