SASSIE statistics

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Associated diseases

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SASSIE specifications

Information


Unique identifier OMICS_26587
Name SASSIE
Alternative name SASSIE-web
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Registration required Yes
Maintained Yes

Maintainer


  • person_outline Joseph Curtis <>

Additional information


https://sassie-web.chem.utk.edu/sassie2/docs/ https://sassie-web.chem.utk.edu/training/main.html Standalone: Version: http://www.smallangles.net/sassie/trac

Information


Unique identifier OMICS_26587
Name SASSIE
Alternative name SASSIE-web
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Joseph Curtis <>

Additional information


https://sassie-web.chem.utk.edu/sassie2/docs/ https://sassie-web.chem.utk.edu/training/main.html Standalone: Version: http://www.smallangles.net/sassie/trac

SASSIE in publications

 (6)
PMCID: 5827731
PMID: 29483575
DOI: 10.1038/s41467-018-03255-3

[…] the entire range of salt concentrations tested (fig.  and supplementary fig. ), suggesting that npm1n188 does not undergo ionic strength-dependent conformational changes. molecular modeling based on sassie (supplementary fig. ), supports the hypothesis that npm1n188 adopts an ensemble of partially expanded conformations, likely caused by electrostatic repulsion within the highly negatively […]

PMCID: 5700061
PMID: 29167428
DOI: 10.1038/s41467-017-01485-5

[…] domain where ignored for saxs modeling. missing residues were added to the monomer crystal structure with psfgen and the resulting structure was relaxed using the energy minimization tool of sassie-web, . this structure was used as a starting point for rigid body modeling using coral and ensemble based modeling using eom at both ph 7.4 and ph 5.5. for the s-sortilin dimer structures, […]

PMCID: 5300068
PMID: 28111019
DOI: 10.1016/j.str.2016.12.014

[…] identified in bold ()—two in the 3d proteins and five in the full-length masps. a dihedral angle monte carlo procedure was used to generate up to 30,000 domain conformations of the six masps using sassie (). sterically overlapping poor models were discarded at their creation. following this, the scattering curve simulations were performed with sct (). the output was compared […]

PMCID: 5257034
PMID: 28138368
DOI: 10.1016/j.csbj.2016.12.004

[…] data. moreover, molecular simulations can be used to obtain ensembles of structures, whereby scattering profiles can be calculated and used to model experimental sans data. tools, such as sassie , are available to generate ensembles of structures using molecular simulations and to compare simulated scattering profiles to experimental data. sascalc (golden vector method)  allows […]

PMCID: 5139988
PMID: 27980506
DOI: 10.1107/S160057671601517X

[…] of this software suite involves a tiered approach in which genapp provides the deployment infrastructure for running applications on both standard and high-performance computing hardware, and sassie provides a workflow framework into which modules can be plugged to prepare structures, carry out simulations, calculate theoretical scattering data and compare results with experimental data. […]


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SASSIE funding source(s)
Supported by CCP-SAS a jont EPSRC (EP/K039121/1) and NSF (CHE-1265821) grant.

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