SAT-Assembler specifications

Information


Unique identifier OMICS_05397
Name SAT-Assembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for SAT-Assembler

SAT-Assembler in publication

PMCID: 5657049
PMID: 29072140
DOI: 10.1186/s12859-017-1826-2

[…] thus, it is also widely adopted for profile homology search in a number of existing ngs analysis pipelines or websites (e.g. img/m [], ebi metagenomics portal [], comet [], hmm-frame [], salt [], sat-assembler [], etc.). however, hmmer is not optimized for short-read homology searches. short reads sequenced from regions of low conservation tend to be missed. one example is shown in fig. , […]


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SAT-Assembler institution(s)
Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA; Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA

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