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Number of citations per year for the bioinformatics software tool SAT-Assembler
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SAT-Assembler specifications

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Unique identifier OMICS_05397
Name SAT-Assembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for SAT-Assembler

SAT-Assembler citation

library_books

A sensitive short read homology search tool for paired end read sequencing data

2017
BMC Bioinformatics
PMCID: 5657049
PMID: 29072140
DOI: 10.1186/s12859-017-1826-2

[…] ns. Thus, it is also widely adopted for profile homology search in a number of existing NGS analysis pipelines or websites (e.g. IMG/M [], EBI metagenomics portal [], CoMet [], HMM-FRAME [], SALT [], SAT-Assembler [], etc.). However, HMMER is not optimized for short-read homology searches. Short reads sequenced from regions of low conservation tend to be missed. One example is shown in Fig. , whic […]


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SAT-Assembler institution(s)
Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA; Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA

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