Protocols

SATMD specifications

Information


Unique identifier OMICS_18927
Name SATMD
Alternative names Staphylococcus aureus Transcriptome Meta-Database, SAMMD, SATRAT
Restrictions to use License purchase required
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Taxon


  • Bacteria
    • Staphylococcus aureus

Maintainers


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Additional information


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Publications for Staphylococcus aureus Transcriptome Meta-Database

SATMD citations

 (2)
library_books

Comparative Transcriptomics Reveals Discrete Survival Responses of S. aureus and S. epidermidis to Sapienic Acid

2017
Front Microbiol
PMCID: 5263133
PMID: 28179897
DOI: 10.3389/fmicb.2017.00033

[…] ally expressed between control and test conditions.Gene expression changes in biosynthetic pathways were associated using KEGG mapper-search and color (; ). The S. aureus transcriptome meta-database (SATMD) () was used to compare sapienic acid DE gene sets with existing S. aureus DE gene sets. […]

call_split

Alterations in the transcriptome and antibiotic susceptibility of Staphylococcus aureus grown in the presence of diclofenac

2011
PMCID: 3158543
PMID: 21774834
DOI: 10.1186/1476-0711-10-30
call_split See protocol

[…] sed to assign a critical cutoff for significance. Microarray data was also compared to published S. aureus gene expression microarray datasets using the Staphylococcus aureus Microarray Metadatabase (SAMMD) as described []. Microarray intensity data files have been deposited in NCBI Gene Expression Omnibus (series accession number GSE30724) (http://www.ncbi.nlm.nih.gov/geo/). […]

SATMD institution(s)
Department of Biological Sciences, The University of Southern Mississippi, MS, USA
SATMD funding source(s)
Supported by a grant (1R15AI062727-01A1) from the National Institute of Allergy and Infectious Diseases (NIAID) to MOE and by The Mississippi Functional Genomics Network (NCRR/NIH P20 RR016476).

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