Satsuma specifications


Unique identifier OMICS_03700
Name Satsuma
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 3.0
Stability Stable
Source code URL
Maintained Yes


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  • person_outline Manfred Grabherr <>

Satsuma article

Satsuma citation

PMCID: 4586145

[…] in at least five samples., we exhaustively aligned the 59,260 identified percent gc and expression breadth filtered sequences against each other using the highly sensitive alignment program satsuma [9], requiring overlaps of 200 nucleotides or more, at sequence similarity of >52%. we then grouped the sequences by agglomerative hierarchical clustering, using 1 minus the identity […]

Satsuma institution(s)
Broad Institute of MIT and Harvard, Cambridge, MA, USA; School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA; Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
Satsuma funding source(s)
Supported by National Human Genome Research Institute (Large Scale Sequencing and Analysis of Genomes, grant no. NIH 1 U54 HG03067, Lander) and ESF EURYI award recipient.

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