SAVAGE specifications


Unique identifier OMICS_13256
Alternative name Strain Aware VirAl GEnome assembly
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A reference genome and alignment files
Input format SAM
Output data Contigs, maximized contigs, and master strains
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Open MP, boost C++, ncbi-blast
Maintained Yes


  • Primates
    • Homo sapiens



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  • person_outline Eric Rivals <>

Publication for Strain Aware VirAl GEnome assembly

SAVAGE institution(s)
Centrum Wiskunde & Informatica, Amsterdam, Netherlands; LIRMM, CNRS and Universite de Montpellier, Montpellier, France; Institut Biologie Computationnelle, CNRS and Universite de Montpellier; France
SAVAGE funding source(s)
This project was supported by the Vidi grant 639.072.309, provided by the Netherlands Organisation for Scientific Research (NWO), by ANR Colib’read (ANR-12-BS02-0008), the Institut de Biologie Computationnelle (ANR-11-BINF-0002) and France Genomique.

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