Savant pipeline

Savant specifications

Information


Unique identifier OMICS_00923
Name Savant
Alternative name Savant Genome Browser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 2.0.4
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Michael Brudno <>
  • person_outline Savant Team <>

Publications for Savant

Savant IN pipeline

2016
PMCID: 5078920
PMID: 27776542
DOI: 10.1186/s13059-016-1079-9

[…] annovar [70]. for this analysis we used all the reads in each sample., adar1, adar2, and apobec1 normalized reads counts were calculated using deseq [71]. mapping visualization was performed using savant genome browser [72]., additional file 1: , we thank gideon rechavi, eli eisenberg, and members of the levanon lab for their helpful discussions. we also thank hagit porath and ilana […]

Savant institution(s)
Department of Computer Science, University of Toronto, ON, Canada; Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, NSW, Australia; Molecular Structure and Function Program, Hospital for Sick Children, Toronto, ON, Canada; Centre for Computational Medicine, Hospital for Sick Children, Toronto, ON, Canada; Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland; Department of Biochemistry, University of Toronto, ON, Canada
Savant funding source(s)
Supported by CIHR Tools, Techniques and Innovation grant and MITACS Seed; the OGI SPARK, an NSERC Graduate Fellowship and Google Summer of Code.

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