Savant specifications

Information


Unique identifier OMICS_00923
Name Savant
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 2.0.4
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Michael Brudno <>
  • person_outline Savant Team <>

Savant articles

Savant citation

2015
PMCID: 4628340

[…] 20. the bam file produced from the mapping procedure was analyzed for structural variations (svs) detection by breakdancer [19] with default parameters. snps, indels and svs were displayed using savant genome browser [20]. copy number variations (cnvs) were detected with call in cnvnator [21]. functional annotation of all the genetic variants was completed by annovar [22]. and the circose […]

Savant institution(s)
Department of Computer Science, University of Toronto, ON, Canada; Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, NSW, Australia; Molecular Structure and Function Program, Hospital for Sick Children, Toronto, ON, Canada; Centre for Computational Medicine, Hospital for Sick Children, Toronto, ON, Canada; Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland; Department of Biochemistry, University of Toronto, ON, Canada
Savant funding source(s)
Supported by CIHR Tools, Techniques and Innovation grant and MITACS Seed; the OGI SPARK, an NSERC Graduate Fellowship and Google Summer of Code.

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