savR | Read quality control

Parses Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots. SavR offers functions to generate a folder of images that approximates the format of the folder that was superseded by InterOp, to return the ratio of clusters with a quality score less than or equal to a specified value (n) for the requested lanes, to sum the total number of clusters for all tiles in the lane, cycles, and many others.

savR specifications

Desktop

Information

Unique identifier	OMICS_15992
Name	savR
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux, Mac OS, Windows
Programming languages	R
License	GNU Affero General Public License version 3
Computer skills	Advanced
Version	1.18.0
Stability	Stable
Requirements	methods, testthat, ggplot2, scales, reshape2, XML, gridExtra, Cairo
Maintained	Yes

Download

Versioning

No version available

Documentation

Documentation: http://bioconductor.org/packages/release/bioc/manuals/savR/man/savR.pdf

Maintainer

Brent Calder

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