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|Interface||Web user interface|
|Restrictions to use||None|
|Input data||The input to the server includes a query sequence and a set of SAXS raw data.|
- person_outline Yang Zhang
Publication for SAXSTER
Structural and molecular comparison of bacterial and eukaryotic trigger factors
[…] DAMMIF and then averaged with DAMAVER . As a last refinement step, the damstart model generated with DAMAVER was refined with one cycle in DAMMIN. Protein structure modelling was performed with the SAXSTER server on the basis of all available full-length TF structures (i.e. from E. coli, T. maritima and V. cholerae) as templates or RaptorX algorithm based on the EcTF structure. Superposition of […]
Reconstruction of SAXS Profiles from Protein Structures
[…] In 2011, the Zhang lab at the University of Michigan introduced SAXSTER, an online tool to improve protein template recognition by using SAXS profiles. In their approach they also simulate the SAXS intensity profile according to the Debye equation. Instead of su […]
Integrative structural modeling with small angle X ray scattering profiles
[…] ructures cannot be identified using a sequence similarity search. Zheng and Doniach  used a SAXS profile to filter structures generated by gapless threading on the templates. The recently developed SAXSTER method  integrates a SAXS-based scoring function with the MUSTER threading algorithm. The SAXS profile fit score is combined with the threading alignment score, resulting in a higher accurac […]
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