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Protocols

SBDG specifications

Information


Unique identifier OMICS_21660
Name SBDG
Alternative names Structural Biology Data Grid, SBGrid Data Bank
Restrictions to use None
Community driven No
Data access File download, Browse, Application programming interface
User data submission Allowed
Content license CC Zero
Maintained Yes

Maintainer


  • person_outline Piotr Sliz

Publication for Structural Biology Data Grid

SBDG citations

 (3)
call_split

Structural and Functional Insight into Canarypox Virus CNP058 Mediated Regulation of Apoptosis

2017
Viruses
PMCID: 5691656
PMID: 29053589
DOI: 10.3390/v9100305
call_split See protocol

[…] PyMOL Molecular Graphics System, Version 1.8 Schrödinger, LLC, New York, NY, USA). All of the software was accessed using the SBGrid suite [,]. All of the raw diffraction images were deposited on the SBGrid Data Bank [] using accession numbers 5WOS. […]

call_split

Biophysical Characterization of Fluorotyrosine Probes Site Specifically Incorporated into Enzymes: E. coli Ribonucleotide Reductase As an Example

2016
J Am Chem Soc
PMCID: 4929525
PMID: 27276098
DOI: 10.1021/jacs.6b03605
call_split See protocol

[…] cted at the Advanced Photon Source beamline 24ID-C on a Pilatus 6 M detector (Dectris) or 24ID-E on a Q315 CCD detector (ASDC). The raw diffraction images for each data set have been deposited in the SBGrid Data Bank. Data were indexed in space group P6122, integrated, and scaled in HKL2000 with cell dimensions of a = b = 91 Å, c = 206 Å. A similar crystal form has been reported for the dimanganes […]

library_books

Data publication with the structural biology data grid supports live analysis

2016
Nat Commun
PMCID: 4786681
PMID: 26947396
DOI: 10.1038/ncomms10882

[…] llection phase represent a wide cross-section of structures and a diverse subset of journal articles and structure determination methods. For example, 68 structures derived from data deposited in the SBDG have been determined by molecular replacement, while 4 have been solved by Multiple-wavelength Anomalous Diffraction, 4 by Single Isomorphous Replacement with Anomalous Scattering and 15 by Singl […]

Citations

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SBDG institution(s)
Department of Biochemistry and Molecular Pharmacology and SBGrid Initiative, Harvard Medical School, Boston, MA, USA; the Dataverse Project, Harvard University, Cambridge, MA, USA
SBDG funding source(s)
Supported by the SBGrid Consortium28 and the Leona M. and Harry B. Helmsley Charitable Trust 2016PG-BRI002, the National Science Foundation 1448069, National Institutes of Health (NIH) P41 GM103403 (NECAT) and 1S10RR028832 (HMS) and DOE DEAC02-06CH11357, NIH 1U54EB020406-01, Big Data for Discovery Science Center, NIST 60NANB15D077 (Globus Project), grants from the NIH, NIH Intramural Program, the Howard Hughes Medical Institute, EU Infrastructure grant, the Swiss National Science Foundation, National Science and Engineering Research Council of Canada, McKnight Scholar Award, Wellcome Trust, Canadian Institutes of Health, ANRS/Fondation de France, Fundacao para a Ciencia e a Tecnologia, Portugal, Welch Foundation, Edward Mallinckrodt Jr. Foundation, and Cancer Prevention and Research Institute of Texas.

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