SBMLEditor specifications


Unique identifier OMICS_21666
Name SBMLEditor
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages C, C++, Java, MATLAB, Perl, Ruby
License GNU General Public License version 2.0
Computer skills Medium
Version 2.0-b2
Stability Stable
Maintained Yes




No version available


  • person_outline Nicolas Le Novère
  • person_outline Nicolas Rodriguez
  • person_outline Marco Donizelli

Additional information

Publication for SBMLEditor

SBMLEditor citations


A Liver Centric Multiscale Modeling Framework for Xenobiotics

PLoS One
PMCID: 5026379
PMID: 27636091
DOI: 10.1371/journal.pone.0162428

[…] y Jarnac [] and JDesigner []. (The Systems Biology Workbench, including Jarnac, is available at Annotation was carried out using SBMLeditor [] ( and the resulting SBML validated, including the units [] ( We paid particular attention to annotating the compounds (e.g., APAP and metabolites) […]


Challenges in horizontal model integration

BMC Syst Biol
PMCID: 4788958
PMID: 26968798
DOI: 10.1186/s12918-016-0266-3

[…] annotations have been added and appropriate names have been assigned to the model elements. The annotations have been edited using the software semanticSBML, names have been edited with the software SBMLeditor. Then semanticSBML has been used to obtain a merged model. The parameterization of the EGF model was chosen for the overlap. In Fig. the network of the merged model is shown. The merged mo […]

SBMLEditor institution(s)
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK
SBMLEditor funding source(s)
Supported by the European Molecular Biology Laboratory.

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