SBMLR statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SBMLR
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Tool usage distribution map

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Associated diseases

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Popular tool citations

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Protocols

SBMLR specifications

Information


Unique identifier OMICS_21542
Name SBMLR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.76.0
Stability Stable
Requirements
XML, rsbml, deSolve
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Tomas Radivoyevitch

Additional information


http://epbi-radivot.cwru.edu/SBMLR/SBMLR.html

SBMLR citations

 (2)
library_books

R Based Software for the Integration of Pathway Data into Bioinformatic Algorithms

2014
Biology
PMCID: 4009765
PMID: 24833336
DOI: 10.3390/biology3010085

[…] he curl tool must be installed. The gaggle package for data exchange relies on Java and the rJava package for communication with other Gaggle applications. The R packages rBiopaxParser, KEGGgraph and SBMLR rely on the XML package and the libxml system library for parsing, similarly rsbml depends on libSBML. For data import the packages NCIgraph and RCytoscape depend on a running Cytoscape session […]

call_split

Folate system correlations in DNA microarray data

2005
BMC Cancer
PMCID: 1198223
PMID: 16080796
DOI: 10.1186/1471-2407-5-95
call_split See protocol

[…] vironment R [] was used with R packages of Bioconductor [] to implement this study. Specifically, the package Biobase was used to manipulate microarray data as expression set (class eset) objects and SBMLR [,] was used to simulate a systems biology markup language (SBML) [-] representation of the folate metabolism model []. R scripts reproducing figures , , , , , , are included with SBMLR as an i […]


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