SBRT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SBRT
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Tool usage distribution map

This map represents all the scientific publications referring to SBRT per scientific context
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Protocols

SBRT specifications

Information


Unique identifier OMICS_05175
Name SBRT
Alternative name Systems Biology Research Tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Systems Biology Research Tool

SBRT citations

 (5)
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Systematic Applications of Metabolomics in Metabolic Engineering

2012
PMCID: 3901235
PMID: 24957776
DOI: 10.3390/metabo2041090
call_split See protocol

[…] rom FBA calculations against actual fluxes as derived from measurements and MFA. Tools such as the COnstraints Based Reconstruction and Analysis (COBRA) toolbox for MATLAB [], CellNetAnalyzer [], the Systems Biology Research Tool (SBRT) [], and OptFlux [] are available for simplified implementation of constraint-based modeling methods (and are listed in ). […]

library_books

Reconstruction of Danio rerio Metabolic Model Accounting for Subcellular Compartmentalisation

2012
PLoS One
PMCID: 3498201
PMID: 23166792
DOI: 10.1371/journal.pone.0049903

[…] We used the Systems Biology Research Tool v2.0.0 to perform flux balance analysis on the networks . Exchange reactions were added to enable uptake and secretion of extracellular metabolites for the purpose of si […]

library_books

Selection for Higher Gene Copy Number after Different Types of Plant Gene Duplications

2011
Genome Biol Evol
PMCID: 3240960
PMID: 22056313
DOI: 10.1093/gbe/evr115

[…] As previously described (), we used the Systems Biology Research Tool v2.0.0 () to perform flux-balance analysis on the A. thaliana and S. bicolor metabolic networks (, ). We estimated the maximal biomass production possible under photosynt […]

library_books

Reconstruction and flux balance analysis of the Plasmodium falciparum metabolic network

2010
Mol Syst Biol
PMCID: 2964117
PMID: 20823846
DOI: 10.1038/msb.2010.60

[…] ied by the ORF's expression level (when available). The percent prevalence of the dNTPs was derived from the genome A+T content of 80.6%. These percentages were converted to mmol/gDW as described (). Systems Biology Research Tool () was used to perform FBA () of the network, including single and double in silico deletions of network enzymes. The reconstructed network was able to either synthesize […]

library_books

Exhaustive identification of steady state cycles in large stoichiometric networks

2008
BMC Syst Biol
PMCID: 2478680
PMID: 18616835
DOI: 10.1186/1752-0509-2-61

[…] The Systems Biology Research Tool [] (version 1.3.0) was used to create the sub-networks of the WW and MS algorithms, using the GNU Linear Programming Kit to solve all linear programs for both algorithms. […]


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SBRT institution(s)
Department of Biochemistry, University of Zurich, Zurich, Switzerland

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