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Associated diseases

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SBSPKS specifications

Information


Unique identifier OMICS_09211
Name SBSPKS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Debasisa Mohanty <>

Publications for SBSPKS

SBSPKS in publications

 (16)
PMCID: 5658590
PMID: 29076296
DOI: 10.1111/1751-7915.12882

[…] web server and a stand‐alone tool for the automatic genomic identification and analysis of biosynthetic gene clusters of any type, with other more specific tools such as clustscan, np.searcher or sbspks focusing on non‐ribosomal peptide and polyketide biosynthesis pathways. such bioinformatic tools are creating great expectations for future drug discovery by revealing the multitude of silent […]

PMCID: 5712208
PMID: 29201559
DOI: 10.7717/peerj.3738

[…] database as its phenazine gene cluster reference was mainly derived from pseudomonas sp. instead of the more complex streptomyces sp. clusters (). other programs such as clusean, nrpspredictor, and sbspks were more suitable for specifically detecting nrps and pks genes but not those of other classes of secondary metabolites including phenazines (). therefore, the phenazine genes […]

PMCID: 4863872
PMID: 27199544
DOI: 10.4137/EBO.S32694

[…] sequences were submitted to ncbi (kt221846-kt221852 and kt213730-kt213740)., ks sequence from uniprot or program database (pdb) was retrieved, and pdb files were generated by subjecting sequences to sbspks software (http://www.nii.ac.in/∼pksdb/sbspks/master.html). ks domain sequences from aspergillus pkss were named in this study as pksp (xp_756095.1/q4 wza8), 6-methylsalicylic acid (6msa; […]

PMCID: 4849084
PMID: 27092515
DOI: 10.3390/md14040080

[…] []. nevertheless, refined predictive models were incorporated in antismash, and np.searcher [] as well as in more specific tools like nrpspredictor2 (nrps.informatik.uni-tuebingen.de) [], sbspks (http://www.nii.ac.in/~pksdb/sbspks/master.html) [] and nrps-pks-substrate-predictor (http://www.cmbi.ru.nl/nrps-pks-substrate-predictor/) []. prediction of putative nrps can be complemented […]

PMCID: 4906002
PMID: 27060604
DOI: 10.1002/mbo3.347

[…] were deciphered combining the results from nrps‐pks analysis website (http://nrps.igs.umaryland.edu/nrps) (bachmann and ravel ) and structure‐based sequence analysis of polyketide synthases (sbspks) (http://www.nii.ac.in/~pksdb/sbspks/search_main_pks_nrps.html) (anand et al. ) with antismash results. the specificity of the a domain was conducted by using the web‐based software […]


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SBSPKS institution(s)
National Institute of Immunology; National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India

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