ScaffMatch specifications

Information


Unique identifier OMICS_08198
Name ScaffMatch
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.9
Stability Stable
Maintained Yes

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Publication for ScaffMatch

ScaffMatch in publication

PMCID: 5731603
PMID: 29244003
DOI: 10.1186/s12864-017-4271-8

[…] to prior work in assembly improvement. for example, our scaffolding step is similar to the likelihood-based gap closing approach of gmcloser [], similar to [], as well as the recently reported scaffmatch []. in contrast, we compute overlaps between sms reads in order to more accurately weight the connections between genome regions. to further validate and compare with prior methods, […]


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ScaffMatch institution(s)
Department of Computer Science, Georgia State University, Atlanta, GA, USA

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