ScaffMatch statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ScaffMatch
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Tool usage distribution map

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Protocols

ScaffMatch specifications

Information


Unique identifier OMICS_08198
Name ScaffMatch
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.9
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


Publication for ScaffMatch

ScaffMatch citation

call_split

Single molecule sequencing guided scaffolding and correction of draft assemblies

2017
BMC Genomics
PMCID: 5731603
PMID: 29244003
DOI: 10.1186/s12864-017-4271-8
call_split See protocol

[…] problem that is NP-hard, but no complexity analysis was given for the scaffolding problem. Here, we show that this scaffolding problem is indeed NP-hard. We also prove that the algorithm presented in ScaffMatch [] is a 2-approximation of an optimal scaffolding using our independent formulation of this model. […]


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ScaffMatch institution(s)
Department of Computer Science, Georgia State University, Atlanta, GA, USA

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