Scaffold perSPECtives statistics

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Scaffold perSPECtives specifications


Unique identifier OMICS_25017
Name Scaffold perSPECtives
Software type Application/Script
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Programming languages Shell (Bash)
Computer skills Advanced
Version 2.1.0
Stability Stable
Free trial Yes
Maintained Yes



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  • person_outline Scaffold Q+ Team <>

Additional information

Scaffold perSPECtives in publications

PMCID: 5912195
PMID: 29696081
DOI: 10.1080/20013078.2018.1463779

[…] pd dataset was further processed through scaffold q + 4.8.2 (proteome software, portland, or) to obtain the protein quantification. files were exported from scaffold 4.8.2 for further analysis in scaffold perspectives (proteome software), where the quantitative analysis (by normalized, weighted spectral counting) and statistical analysis (two-tailed anova, control fdr with standard […]

PMCID: 5915062
PMID: 29719595
DOI: 10.18632/oncotarget.24773

[…] digest was analyzed by nano-lc-orbitrap ms/ms. the ipa classified proteins were compared with their abundances in the two cervical cancer groups (early and late stage) and in the various cell lines. scaffold perspectives viewer (version 2.1.0, proteome software inc., portland, or) was used for visualization of proteins found in cervical-derived tissue by using lcm simultaneously with results […]

PMCID: 5465101
PMID: 28596590
DOI: 10.1038/s41598-017-03226-6

[…] from 1dlc, 2dlc and 3dlc yielded average fdrs of 0.10%, 0.26% and 1% at the spectrum, peptide and protein levels, respectively (supplemental file ). then the datasets were combined together with scaffold perspectives., in 1d analysis, 808 protein groups were identified in three technical replicates, and the protein-overlapping rate was 86.3%, indicating the superior reproducibility of lc/ms […]

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