Scaffold PTM protocols

Scaffold PTM specifications

Information


Unique identifier OMICS_25016
Name Scaffold PTM
Software type Application/Script
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Programming languages Shell (Bash)
Computer skills Advanced
Version 3.1
Stability Stable
Free trial Yes
Maintained Yes

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Documentation


Maintainer


  • person_outline Scaffold Q+ Team <>

Additional information


https://proteomesoftware.zendesk.com/hc/en-us/articles/213578506-Proteome-Software-Installation-Guide

Publication for Scaffold PTM

Scaffold PTM IN pipeline

2016
PMCID: 4890981
PMID: 26885753
DOI: 10.18632/oncotarget.7380

[…] ratios were analyzed to account for potential changes in phosphorylation of proteins that were not identified in our initial proteomic analysis., consensus motif analysis was performed using scaffold ptm (version 2.1.3) to determine overrepresented kinase motifs surrounding phosphorylation sites, using the method developed by gygi and schwartz [20], as well as potential enzyme […]

Scaffold PTM institution(s)
Proteome Software, Inc., Portland, OR, USA

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