SCANPS statistics

Citations per year

Tool usage distribution map

This map represents all the scientific publications referring to SCANPS per scientific context

Associated diseases

Popular tool citations

Amino acid sequence homology search

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SCANPS specifications

Web

Information

Unique identifier	OMICS_24601
Name	SCANPS
Interface	Web user interface
Restrictions to use	None
Input data	A protein sequence.
Input format	FASTA
Output data	Tables of hits for each iteration, together with associated pairwise alignments and multiple alignments for all of the hits in a given iteration.
Computer skills	Basic
Stability	Stable
Maintained	No

Maintainer

This tool is not available anymore.

Publication for SCANPS

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser.

2008 Nucleic Acids Res

PMCID: 2447745

PMID: 18503088

DOI: 10.1093/nar/gkn320

SCANPS citation

Web Services at the European Bioinformatics Institute

2007

Nucleic Acids Res

PMCID: 1933145

PMID: 17576686

DOI: 10.1093/nar/gkm291

[…] tp://www.ebi.ac.uk/MPsrch/) is a biological sequence sequence comparison tool that implements the true Smith and Waterman algorithm (). It allows a rigorous search in a reasonable computational time. SCANPS (Scan Protein Sequence, http://www.ebi.ac.uk/scanps/) is another program for comparing a protein sequence to a database of protein sequences. It also implements the full Smith–Waterman style se […]

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SCANPS institution(s)

College of Life Sciences, University of Dundee, Dundee, UK; EMBL-European Bioinformatics Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Departments of Physiology, Anatomy and Genetics, MRC Functional Genetics Unit, University of Oxford, South Parks Road, Oxford, UK; The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Biomatters Ltd, Auckland, New Zealand

SCANPS funding source(s)

Supported by the Royal Society, European Molecular Biology Laboratory, and the Scottish Funding Council (Scottish Bioinformatics Research Network grant).

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