Scanpy specifications


Unique identifier OMICS_20346
Name Scanpy
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Requirements sphinx-bootstrap-theme, numpydoc
Maintained Yes



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  • person_outline Fabian Theis <>

Publication for Scanpy

Scanpy institution(s)
Helmholtz Zentrum München – German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, Munich, Germany; Department of Mathematics, Technische Universität München, Munich, Germany
Scanpy funding source(s)
Supported by the Helmholtz Postdoc Programme, Initiative and Networking Fund of the Helmholtz Association.

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