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ScanRanker specifications

Information


Unique identifier OMICS_05394
Name ScanRanker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for ScanRanker

ScanRanker citations

 (2)
library_books

Soil and leaf litter metaproteomics—a brief guideline from sampling to understanding

2016
PMCID: 5026301
PMID: 27549116
DOI: 10.1093/femsec/fiw180

[…] their generation is costly and not practicable in dimensions demanded by metaproteomics. however, high-quality spectra can be used as a reference even if they are identified not yet. tools such as scanranker support selection of unidentified high-quality spectra by automatic routines (ma et al. ) whose occurrence can be then followed across different samples and ecosystems (muth et al. ). […]

library_books

Development of an Enhanced Metaproteomic Approach for Deepening the Microbiome Characterization of the Human Infant Gut

2014
PMCID: 4286196
PMID: 25350865
DOI: 10.1021/pr500936p

[…] portion of high-quality spectra in a metaproteomic study remain unassigned due to the incompleteness of the proteomic database. to quantify this, we employed a spectral quality assessment tool, scanranker, to assign scores for all of the collected spectra to evaluate the quality of the database (). using scanranker scores, a distribution of total collected spectra including unassigned, […]


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ScanRanker institution(s)
Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA

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