ScanRanker specifications


Unique identifier OMICS_05394
Name ScanRanker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for ScanRanker

ScanRanker citations


Soil and leaf litter metaproteomics—a brief guideline from sampling to understanding

PMCID: 5026301
PMID: 27549116
DOI: 10.1093/femsec/fiw180

[…] s, their generation is costly and not practicable in dimensions demanded by metaproteomics. However, high-quality spectra can be used as a reference even if they are identified not yet. Tools such as ScanRanker support selection of unidentified high-quality spectra by automatic routines (Ma et al. ) whose occurrence can be then followed across different samples and ecosystems (Muth et al. ). Promi […]


Development of an Enhanced Metaproteomic Approach for Deepening the Microbiome Characterization of the Human Infant Gut

J Proteome Res
PMCID: 4286196
PMID: 25350865
DOI: 10.1021/pr500936p

[…] arger portion of high-quality spectra in a metaproteomic study remain unassigned due to the incompleteness of the proteomic database. To quantify this, we employed a spectral quality assessment tool, ScanRanker, to assign scores for all of the collected spectra to evaluate the quality of the database (). Using ScanRanker scores, a distribution of total collected spectra including unassigned, assig […]

ScanRanker institution(s)
Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA

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