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Scansite specifications

Information


Unique identifier OMICS_02980
Name Scansite
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Version 3.0
Stability Beta
Maintained Yes

Maintainer


  • person_outline Michael B. Yaffe <>

Publications for Scansite

Scansite in publications

 (327)
PMCID: 5931534
PMID: 29717115
DOI: 10.1038/s41467-018-03907-4

[…] suggest that dapk2 is an important downstream effector of ampk in promoting autophagy., to search for possible kinases that regulate dapk2, the amino acid sequence of dapk2 was analyzed using the scansite algorithm at high stringency, looking for all potential motifs. four potential phosphorylation sites were found (tyr208, thr265, ser289, thr359). next, this list was crossed […]

PMCID: 5928383
PMID: 29577611
DOI: 10.1002/1878-0261.12195

[…] 1 and the distance between genes with correlating copy numbers (http://vega.sanger.ac.uk) (harrow et al., ). in addition, a gene‐based display of srarp and hspb7 was obtained using vega., scansite 3 software was employed to identify motifs within hspb7 protein that are likely to be phosphorylated by specific protein kinases or bind to domains such as sh2, 14‐3‐3, or pdz […]

PMCID: 5892595
PMID: 29467227
DOI: 10.1074/jbc.RA117.001379

[…] and modulating any of the above mitotic regulators. previous studies have revealed the optimal consensus phosphorylation motif for ampk (, ). we therefore applied a bioinformatics tool (scansite3 ()) to search for putative ampk-mediated phosphorylation motifs in cdc25c, wee1, myt1, cdc2, and cyclin b1. the inspection of these protein sequences revealed one putative ampk […]

PMCID: 5787100
PMID: 29410630
DOI: 10.3389/fphys.2018.00015

[…] in the early period and reached the highest expression at 4 h (figure ). to identify whether pde3b could be phosphorylated by akt, complete amino-acid sequences of pde3b were scanned by the scansite databases. search result revealed that mice pde3b contains akt consensus phosphorylation sites (figure ), suggesting that the involvement of akt in pde3b phosphorylation. […]

PMCID: 5794190
PMID: 29357390
DOI: 10.1371/journal.ppat.1006852

[…] including gene ontology [], panther [] and the kyoto encyclopedia of genes and genomes (kegg) []. protein interaction networks were visualized using the circos software []. the 14-3-3pred [] and scansite motifscan [] softwares were used to predict putative 14-3-3 binding site in bplf1., for immunoblotting and co-immunoprecipitation cells harvested 48hrs post transfection were lysed in np-40 […]


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Scansite institution(s)
Center for Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA

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