scell_hicpipe specifications


Unique identifier OMICS_20368
Name scell_hicpipe
Alternative name Single cell Hi-C Pipeline
Restrictions to use None
Input data A list of mapped read pairs and a list of restriction enzyme sites in the genome.
Output data A list of interacting fragment end pairs.
Operating system Unix/Linux
Computer skills Advanced
Version 1_2
Stability Stable
Maintained Yes




No version available


  • person_outline Peter Fraser
  • person_outline Amos Tanay
  • person_outline Ernest Laue
  • person_outline Yaniv Lubling

Publication for Single cell Hi-C Pipeline

scell_hicpipe institution(s)
Nuclear Dynamics Programme, The Babraham Institute, Cambridge, UK; Department of Computer Science and Applied Mathematics and Department of Biological Regulation, Weizmann Institute, Rehovot, Israel; Department of Biochemistry, University of Cambridge, UK; Epigenetics Programme, The Babraham Institute, Cambridge, UK
scell_hicpipe funding source(s)
Supported by the Medical Research Council, the Biotechnology and Biological Sciences Research Council, the MODHEP project, the Israel Science Foundation and the Wellcome Trust.

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