SCell specifications

Unique identifier:
Command line interface, Graphical user interface
Input data:
SCell accepts as input a matrix of raw gene counts with genes as rows and cells as columns.
Computer skills:
Software type:
Restrictions to use:
Operating system:
Unix/Linux, Mac OS, Windows


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SCell distribution


SCell support


  • Aaron Diaz <>


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Department of Neurological Surgery, UCSF, San Francisco, CA, USA; Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, San Francisco, CA, USA; Veterans Affairs Medical Center, San Francisco, CA, USA

Funding source(s)

This work has been supported by UCSF-CTSI UL1 TR000004; a Shurl and Kay Circa Foundation Research Grant; a Damon Runyon Cancer Research Foundation postdoctoral fellowship (DRG-2166-13); a VA award 5I01 BX000252; and by NIH awards U01 MH105989 and R01NS075998.

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