SCExV specifications


Unique identifier OMICS_10210
Name SCExV
Alternative name Single Cell Expression Visualiser
Interface Web user interface
Restrictions to use None
Input data SCExV is able to take any data matrix of Ct values as an input, but can handle files exported by the Fluidigm Biomark platform directly. In addition, SCExV also accepts and automatically integrates cell surface marker intensity values which are measured during index sorting. This allows the user to directly visualise relationships between a single cell gene expression profile and the immunophenotype of the interrogated cell.
Programming languages Javascript, Perl, R
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Shamit Soneji <>

Publication for Single Cell Expression Visualiser

SCExV institution(s)
Division of Molecular Hematology, Lund University, Lund, Sweden; Lund Stem Cell Center, Lund University, Lund, Sweden
SCExV funding source(s)
This work was supported by Hemato-Linnè and StemTherapy which are funded by the Swedish Research Council and the Swedish Government respectively, Cancerfonden, and the ERC.

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