SCG specifications

Information


Unique identifier OMICS_11814
Name SCG
Alternative name Single Cell Genotyper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Cell-target matrix
Output data The input data is expected to be discrete observations of point mutations, usually SNVs, but other types of data can be used.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements panda, numpy, scipy, PyYaml
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Sohrab P. Shah <>

Publication for Single Cell Genotyper

SCG institution(s)
Department of Molecular Oncology, BC Cancer Agency, Vancouver, BC, Canada; Graduate Bioinformatics Training Program, University of British Columbia, Vancouver, BC, Canada; School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada; Department of Gynecology and Obstetrics, University of British Columbia, Vancouver, BC, Canada; Department of Statistics, University of British Columbia, Vancouver, BC, Canada; Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada
SCG funding source(s)
The BC Cancer Foundation; the Canadian Breast Cancer Foundation; the Canadian Cancer Society Research Institute (impact grant 701584); the Terry Fox Research Institute (PPG program on forme fruste tumors); Canadian Institutes for Health Research (CIHR) (grant MOP-115170); CIHR Foundation (grant FDN-143246); a CIHR new investigator grant (MSH-261515); a Charles Best CIHR doctoral scholarship; a Frederick Banting doctoral scholarship; Canada Research Chairs; a Michael Smith Foundation for Health Research scholar

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