SCHISM specifications


Unique identifier OMICS_16121
Alternative name SubClonal Hierarchy Inference from Somatic Mutations
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A tab-delimited table listing somatic mutation allele specific read counts and integer copy number value, or a tab-delimited list of the estimated value and standard error of cellularity for each somatic mutation in each tumor sample, a tab-delimited file that assigns each somatic mutation to a mutation cluster.
Output data The subclone tree reconstruction.
Operating system Unix/Linux
License Other
Computer skills Advanced
Version 1.1.2
Stability Stable
Requirements Matplotlib, igraph c core, python-igraph, numpy, scipy, PyYAML, sklearn
Source code URL
Maintained Yes



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  • person_outline Rachel Karchin <>

Publication for SubClonal Hierarchy Inference from Somatic Mutations

SCHISM funding source(s)
This work was supported by funds from National Cancer Institute R01CA179991.

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