SciClone pipeline

SciClone specifications

Information


Unique identifier OMICS_05106
Name SciClone
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Apache License version 2.0
Computer skills Advanced
Version 1.1.0
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Li Ding <>
  • person_outline Chris Miller <>

Additional information


The Genome Institute, Washington University, St. Louis, MO, USA; Department of Internal Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, MO, USA; Department of Genetics, Washington University, St. Louis, MO, USA; Siteman Cancer Center, Barnes-Jewish Hospital, Washington University School of Medicine, St. Louis, MO, USA; Massachusetts General Hospital, Boston, MA, USA; Liggins Institute, Auckland, New Zealand

Publication for SciClone

SciClone IN pipelines

 (2)
2017
PMCID: 5655919
PMID: 28748566
DOI: 10.1111/bjh.14863

[…] ng spriworks fragment library cartridges i (beckman coulter, brea, ca, usa) with a size selection of 200–400 bp. from september 2015, the trimming, 3’‐adenylation and adaptor ligations were done on a sciclone g3 robot (perkin elmer, waltham, ma, usa) using illumina‐compatible kapa library dna adaptors (roche diagnostics, basel, switzerland). sequencing was performed as paired‐end sequencing, 2 × 1 […]

2017
PMCID: 5698805
PMID: 29177109
DOI: 10.4172/2161-0460.1000355

[…] the sureselect human all exon 50mb kit (agilent technologies) and the paired-end multiplexed sequencing library kit (illumina). exome capture and sequence library construction was performed on a sciclone g3 ngs workstation (caliper life sciences) and dna was tested for uniform enrichment of targets with qpcr following established protocols provided by agilent. two exome sample libraries […]

SciClone institution(s)
Supported by NHGRI grant U01HG006517, NHGRI grant U54HG003079, an International Myeloma Foundation Brian D. Novis research grant, Barnes-Jewish Hospital Foundation grant 7603-55, NIH/NCI SPORE in Leukemia grant P50CA171063, NIH/NCI grant 1K12CA167540, and Clinical and Translational Award from the NIH National Center for Advancing Translational Sciences grant UL1 TR000448.

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