Scipion specifications

Information


Unique identifier OMICS_14119
Name Scipion
Software type Framework/Library
Interface Graphical user interface
Restrictions to use None
Input data CTF, coordinates, micrographs, particles
Input format CTFPARAM, LOG, TXT, OUT, LOG, BOX, JSON, POS, STAR, EMX, SCIPION, XMIPP
Output data 3D models of macromolecular complexes
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Medium
Version 1.1
Stability Stable
Requirements OpenJDK, libopenmpi-dev, openmpi-bin, gfortran
Maintained Yes

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Documentation


Maintainer


  • person_outline Jose Miguel de la Rosa-Trevín <>

Information


Unique identifier OMICS_14119
Name Scipion
Interface Web user interface
Restrictions to use None
Programming languages C++, Python
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Jose Miguel de la Rosa-Trevín <>

Scipion article

Scipion institution(s)
Biocomputing Unit, National Center for Biotechnology (CSIC), Darwin 3, Campus Universidad Autónoma de Madrid, Madrid, Spain; Escuela Politécnica Superior, Universidad Autónoma de Madrid, Campus Universidad Autónoma, Madrid, Spain; Neuroscience, Physiology and Pharmacology Department, University College London, London, UK; EyeSeeTea Ltd., Cheltenham, Gloucestershire, UK; L’Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch-Graffenstaden, France; Bioengineering Lab., Universidad CEU San Pablo, Madrid, Spain
Scipion funding source(s)
Supported by a ‘‘Comfuturo” grant funded by the Fundación General CSIC, a Ramón y Cajal fellowship from the Spanish Ministry of Economy and Competitiveness (MINECO); by the MINECO through Grants AIC-A-2011-0638, BFU2013-41249-P and BIO2013-44647-R, the Comunidad de Madrid through Grant CAM (S2010/BMD-2305), the European Union (EU) and Horizon 2020 through Grants EINFRA-2014-2: EGI Engage (Proposal: 654142) and EINFRA-2015-1: West-Life (Proposal: 675858); and by Instruct, a component of the European Strategy Forum on Research Infrastructures (ESFRI).

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