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SciPy specifications


Unique identifier OMICS_32742
Name SciPy
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.1.0
Stability Stable
Maintained Yes


No version available


Additional information

SciPy citations


Accurate and fiducial marker free correction for three dimensional chromatic shift in biological fluorescence microscopy

Sci Rep
PMCID: 5954143
PMID: 29765093
DOI: 10.1038/s41598-018-25922-7

[…] t between the two images, as described for rotation. Then, using these estimates as an initial guess, registration parameters were obtained with the simplex algorithm using the ‘fmin’ function of the Scipy package ( by minimizing the returned value of the cost function, which performs (i) affine transformation according to the given registration parameters starting from the in […]


Bayesian model selection for complex dynamic systems

Nat Commun
PMCID: 5935699
PMID: 29728622
DOI: 10.1038/s41467-018-04241-5
call_split See protocol

[…] The website further provides access to code examples, tutorials and documentation. bayesloop uses functionality of other Python modules, namely NumPy, SciPy (, SymPy, Matplotlib, Pathos, and tqdm. […]


Analysis of LCT 13910 genotypes and bone mineral density in ancient skeletal materials

PLoS One
PMCID: 5927400
PMID: 29708972
DOI: 10.1371/journal.pone.0194966

[…] version of ANOVA (Kruskal-Wallis H test) was used to test the heterogeneity in BMD between different genotypes (TT, CT, CC). The statistical analyses were performed in Python (3.5.0) with the help of SciPy library (0.18.1) []. […]


The Relation Between Capillary Transit Times and Hemoglobin Saturation Heterogeneity. Part 1: Theoretical Models

Front Physiol
PMCID: 5932636
PMID: 29755365
DOI: 10.3389/fphys.2018.00420

[…] an explicit function of hematocrit and the vessel geometry.Given the sink term jt(x), Equation (10) can be integrated numerically using a standard differential equation solver. The implementation in SciPy (Jones et al., ) of an explicit Runge-Kutta method of order 4(5) was used (Hairer et al., ).In the modeling of diffusive integration between parallel capillaries, knowledge of the Po2 in the tis […]


Recurrent Neural Networks for Multivariate Time Series with Missing Values

Sci Rep
PMCID: 5904216
PMID: 29666385
DOI: 10.1038/s41598-018-24271-9

[…] ne data point in these two imputation methods. Therefore we can not use them on time series with different lengths. We implemented these models in python based on fancyimpute, predictive_imputer, and SciPy libraries. We followed their original code and paper for hyperparameter setting and tuning strategies. […]


Serum 25 hydroxyvitamin D levels throughout pregnancy: a longitudinal study in healthy and preeclamptic pregnant women

PMCID: 5952242
PMID: 29666170
DOI: 10.1530/EC-18-0055
call_split See protocol

[…] Statistical analysis was performed using software Python with Scipy and Matplotlib libraries. The normality of the variables was defined by Kolmogorov–Smirnov test. Data with normal distribution were reported as mean ± standard deviation (s.d.), while data with […]


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