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SSR Classification and Investigation by Robert Kofler SciRoKo

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A user-friendly software tool for the identification of microsatellites in genomic sequences. The combination of an extremely fast search algorithm with a built-in summary statistic tool makes SciRoKo an excellent tool for full genome analysis. SciRoKo contains two main modules: a simple sequence repeat (SSR) search module, which supports five different SSR search modes and a module for SSR-statistics, notably for mismatch frequency and compound microsatellite analysis. Compared to other already existing tools, SciRoKo also allows the analysis of compound microsatellites.

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SciRoKo forum

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SciRoKo classification

SciRoKo specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C#
Computer skills:
Medium
Stability:
Stable
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
Mozilla Public License version 2.0
Version:
3.4
Maintained:
Yes

SciRoKo distribution

versioning

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No versioning.

SciRoKo support

Maintainer

  • Robert Kofler <>

Credits

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Publications

Institution(s)

University of Natural Resources and Applied Life Sciences, Department for Agrobiotechnology IFA-Tulln, Institute of Biotechnology in Plant Production, Tulln, Austria; Institut für Ökologie, Universität Innsbruck, Innsbruck, Austria; Institut für Tierzucht and Genetik, Veterinärmedizinische Universitat Wien, Wien, Austria

Funding source(s)

The Austrian Science Fund (FWF, No P18414-B14); the Fonds zur Förderung der wissenschaftlichen Forschung (FWF)

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.