SCLUST statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SCLUST

Tool usage distribution map

This map represents all the scientific publications referring to SCLUST per scientific context
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SCLUST specifications


Unique identifier OMICS_33342
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Didier Debroas
  • person_outline Alexandre Bazin

Publication for SCLUST

SCLUST citations


An Integrated Pipeline of Open Source Software Adapted for Multi CPU Architectures: Use in the Large Scale Identification of Single Nucleotide Polymorphisms

Comp Funct Genomics
PMCID: 2216057
PMID: 18273384
DOI: 10.1155/2007/35604

[…] rge number of clusters. In addition, slave nodes can immediately inform the master upon completion of their assigned task. Thereafter, clustering is carried out using clustering utilities from TGICL: sclust, tclust, and nrcl []. The main idea behind clustering is to split the task of assembling the entire set of sequences into the assembling of several clusters of similar sequences. The assembly p […]


Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

BMC Genomics
PMCID: 2206039
PMID: 18031571
DOI: 10.1186/1471-2164-8-427

[…] (spanning their insertion sites or recombination breakpoints, see also Discussion). To separate these unrelated sequences, the contigs assembled from CL1 were further grouped into sub-clusters using sclust (parameters HEAVY = 3010 SCORE = 150), which performs weighted seeded clustering based on mutual similarities of the contigs. The programs mgblast, tclust, tgicl, cap3 and sclust are included i […]

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SCLUST institution(s)
University Clermont Auvergne, CNRS, LIMOS, Clermont-Ferrand, France; University Clermont Auvergne, CNRS, LMGE, Clermont-Ferrand, France
SCLUST funding source(s)
Supported by the European Union’s ‘‘Fonds Européen de Développement Régional (FEDER)’’ program and the Auvergne-Rhone-Alpes region.

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