SCLUST specifications

Information


Unique identifier OMICS_33342
Name SCLUST
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Didier Debroas
  • person_outline Alexandre Bazin

Publication for SCLUST

SCLUST citations

 (2)
library_books

An Integrated Pipeline of Open Source Software Adapted for Multi CPU Architectures: Use in the Large Scale Identification of Single Nucleotide Polymorphisms

2007
Comp Funct Genomics
PMCID: 2216057
PMID: 18273384
DOI: 10.1155/2007/35604

[…] rge number of clusters. In addition, slave nodes can immediately inform the master upon completion of their assigned task. Thereafter, clustering is carried out using clustering utilities from TGICL: sclust, tclust, and nrcl []. The main idea behind clustering is to split the task of assembling the entire set of sequences into the assembling of several clusters of similar sequences. The assembly p […]

library_books

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

2007
BMC Genomics
PMCID: 2206039
PMID: 18031571
DOI: 10.1186/1471-2164-8-427

[…] (spanning their insertion sites or recombination breakpoints, see also Discussion). To separate these unrelated sequences, the contigs assembled from CL1 were further grouped into sub-clusters using sclust (parameters HEAVY = 3010 SCORE = 150), which performs weighted seeded clustering based on mutual similarities of the contigs. The programs mgblast, tclust, tgicl, cap3 and sclust are included i […]

SCLUST institution(s)
University Clermont Auvergne, CNRS, LIMOS, Clermont-Ferrand, France; University Clermont Auvergne, CNRS, LMGE, Clermont-Ferrand, France
SCLUST funding source(s)
Supported by the European Union’s ‘‘Fonds Européen de Développement Régional (FEDER)’’ program and the Auvergne-Rhone-Alpes region.

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