Protocols

Scluster specifications

Information


Unique identifier OMICS_26679
Name Scluster

Maintainer


This tool is not maintained anymore.

Publication for Scluster

Scluster citation

call_split

Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments

2012
Microb Inform Exp
PMCID: 3351711
PMID: 22587938
DOI: 10.1186/2042-5783-2-2
call_split See protocol

[…] ending indices of each cluster.cluster (clusteringData, m, hashrange, indicesinCluster)diagscore ← diagonal(clusteringData, 1);minVal ← min (clusteringData);maxVal ← max (clusteringData);cNum ← i ← 1;sCluster(1) ← 1;while i < m-1index1 ← (diagScore(i)- minVal)/(maxVal - minVal)*(hashrange -1))+1;index2 ← (diagScore(i+1)- minVal)/(maxVal - minVal)*(hashrange-1))+1;if (abs(index2-index1) > = indices […]

Scluster institution(s)
College of Electrical Engineering and Automation, Anhui University, Hefei, China; Institute of Health Sciences, Anhui University, Hefei, China; Co-Innovation Center for Information Support and Assurance Technology, Anhui University, Hefei, China
Scluster funding source(s)
Supported by the National Natural Science Foundation of China (31301101&61272339), the Anhui Provincial Natural Science Foundation (1408085QF106&1508085QF135).

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