Scluster specifications


Unique identifier OMICS_26679
Name Scluster


This tool is not maintained anymore.

Publication for Scluster

Scluster citation


Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments

Microb Inform Exp
PMCID: 3351711
PMID: 22587938
DOI: 10.1186/2042-5783-2-2
call_split See protocol

[…] ending indices of each cluster.cluster (clusteringData, m, hashrange, indicesinCluster)diagscore ← diagonal(clusteringData, 1);minVal ← min (clusteringData);maxVal ← max (clusteringData);cNum ← i ← 1;sCluster(1) ← 1;while i < m-1index1 ← (diagScore(i)- minVal)/(maxVal - minVal)*(hashrange -1))+1;index2 ← (diagScore(i+1)- minVal)/(maxVal - minVal)*(hashrange-1))+1;if (abs(index2-index1) > = indices […]

Scluster institution(s)
College of Electrical Engineering and Automation, Anhui University, Hefei, China; Institute of Health Sciences, Anhui University, Hefei, China; Co-Innovation Center for Information Support and Assurance Technology, Anhui University, Hefei, China
Scluster funding source(s)
Supported by the National Natural Science Foundation of China (31301101&61272339), the Anhui Provincial Natural Science Foundation (1408085QF106&1508085QF135).

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