SCnorm pipeline

SCnorm specifications

Information


Unique identifier OMICS_13863
Name SCnorm
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format UTF-8
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.1.1
Stability Stable
Source code URL https://codeload.github.com/rhondabacher/SCnorm/tar.gz/v1.1.1
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Christina Kendziorski <>
  • person_outline Rhonda Bacher <>

Publication for SCnorm

SCnorm IN pipeline

2017
PMCID: 5746276
PMID: 29240790
DOI: 10.1371/journal.pbio.2004050

[…] missing. the wavecrest algorithm was also used as above to obtain a cyclic order on the set of unstressed single cells based on five rp genes (s5 table)., length-normalized read counts were taken as scnorm-normalized read counts per transcript divided by transcript length, and the mean (or median) for each transcript across all unstressed or stressed cells was calculated; mean and median values […]

SCnorm institution(s)
Department of Statistics, University of Wisconsin, Madison, WI, USA; Morgridge Institute for Research, Madison, WI, USA; Laboratory of Genetics, University of Wisconsin, Madison, WI, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA
SCnorm funding source(s)
Supported by NIH GM102756, NIH U54 AI117924, 1T32LM012413-01A1, NIH 5U01HL099773 and the Morgridge Institute for Research.

SCnorm reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SCnorm