SCNV specifications

Information


Unique identifier OMICS_16813
Name SCNV
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Xuefeng Wang

Publication for SCNV

SCNV citation

library_books

Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts

2018
BMC Genomics
PMCID: 5932867
PMID: 29720102
DOI: 10.1186/s12864-018-4709-7

[…] type diversification is ubiquitous in oomycetes and potentially plays a major role in pathogen evolution.In addition to cnLOH and aneuploidy, a new type of chromosomal aberration we termed short CNV (sCNV) euploid was identified in two isolates in Clusters 1 and 2. In the two sCNV euploids, the majority of CNV segments were found in the multicopy regions of the genome, such as at TEs and tandem re […]

SCNV institution(s)
Department of Statistics, University of California, Davis, CA, USA

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