SCODE specifications

Unique identifier:
OMICS_13693
Interface:
Command line interface
Input data:
A file with G x C matrix of expression data and a file with time point data
Output format:
TXT
Programming languages:
R, Ruby, Julia
Computer skills:
Advanced
Requirements:
MASS
Software type:
Package/Module
Restrictions to use:
None
Output data:
A file with G x G matrix; a file with D x D diagonal matrix; a file with G x D matrix and the residual sum of squares of linear regression
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable
Maintained:
Yes

versioning

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SCODE distribution

download

SCODE support

Documentation

Maintainer

  • Hirotaka Matsumoto <>

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Publications

Institution(s)

Bioinformatics Research Unit, Advanced Center for Computing and Communication, Riken, Saitama, Japan; Department of Computational Biology and Medical Sciences, Faculty of Frontier Sciences, The University of Tokyo, Chiba, Japan; Quantitative Biology Center, Riken, Osaka, Japan; Department of Systems Medicine, Keio University School of Medicine, Tokyo, Japan

Funding source(s)

Supported by a Grant-in-Aid for Japan Society for the Promotion of Science (JSPS) Fellows, JSPS KAKENHI (Grant Numbers 16J05079, 15H01465, 25134701, 25870190, and 16H01532) and Core Research for Evolutional Science and Technology (CREST) “Creation of Fundamental Technologies for Understanding and Control of Biosystem Dynamics” from the Japan Science and Technology Agency (JST).

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