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Protocols
SCOPE specifications
Information
| Unique identifier | OMICS_03828 |
|---|---|
| Name | SCOPE |
| Alternative name | Suite for Computational identification Of Promoter Elements |
| Interface | Web user interface |
| Restrictions to use | None |
| Computer skills | Basic |
| Version | 2.1.0 |
| Stability | No |
| Maintained | No |
Publication for Suite for Computational identification Of Promoter Elements
SCOPE citations
(4)Dysregulated IER3 Expression is Associated with Enhanced Apoptosis in Titin Based Dilated Cardiomyopathy
[…] [] was used to identify potential IER3 binding motifs. Minimal motif width from 6 to 4 and maximum motif width from 6–10, 14 and 50 were tested. The IER3 binding motif was confirmed by ChIPMotifs [], Suite for Computational identification Of Promoter Elements (SCOPE) [] and Discovering Ranked Imbalanced Motifs using suffix trees (DRIMust) [] and then analyzed by Find Individual Motif Occurrences ( […]
Two Enhancers Control Transcription of Drosophila muscleblind in the Embryonic Somatic Musculature and in the Central Nervous System
[…] ng sites used JASPAR . Phylogenetic conservation employed the Whole Genome rVISTA browser . EST mapping was according to the UCSC Genome Browser database . Predicted promoter consensus sequences used Suite for Computational Identification of Promoter Elements (SCOPE) . Genomes of reference were Drosophila BDGP R5/dm3 and human GRCh37releases. […]
Development of a Fur dependent and tightly regulated expression system in Escherichia coli for toxic protein synthesis
[…] moter prediction program from Softberry (http://linux1.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb), BDGP-Promoter (http://www.fruitfly.org/seq_tools/promoter.html) and SCOPE-Suite for Computational identification Of Promoter Elements []. […]
Identification of Early Zygotic Genes in the Yellow Fever Mosquito Aedes aegypti and Discovery of a Motif Involved in Early Zygotic Genome Activation
[…] The Suite for Computational Identification of Promoter Elements (SCOPE) is a parameter-free program designed to identify cis sequences in a set of co-regulated genes (http://genie.dartmouth.edu/scope/). S […]
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