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Information


Unique identifier OMICS_10553
Name SCOR
Alternative name Structural Classification Of RNA
Restrictions to use None
Version 2.0
Maintained No

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Publications for Structural Classification Of RNA

SCOR citations

 (16)
library_books

A membrane inserted structural model of the yeast mitofusin Fzo1

2017
Sci Rep
PMCID: 5578988
PMID: 28860650
DOI: 10.1038/s41598-017-10687-2

[…] OCTOPUS and TMpred (Supplementary Table ). Ab initio modelling of the TM segments was performed using the PREDDIMER server, and the best model was selected according to the proposed ranking score (F SCOR 3.113). […]

library_books

Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace

2017
Front Plant Sci
PMCID: 5410667
PMID: 28507554
DOI: 10.3389/fpls.2017.00647

[…] ssembly (RGA) was generated with the Tuxedo pipeline (Trapnell et al., ). First, clean reads were mapped to the IBGSC cv. Morex assembly (Mayer et al., ) with Tophat2 (v2.0.9; –b2-very-sensitive, –b2-scor-min C, − 28,0 –read-mismatches 4–read-gap-length 12 –read-edit-dist 12-G 21Aug12_Transcript_and_CDS_structure.gff). This mapping procedure was performed in two steps, a first one to exclude reads […]

library_books

Structural Insight into Anaphase Promoting Complex 3 Structure and Docking with a Natural Inhibitory Compound

2017
PMCID: 5359995
PMID: 28401073
DOI: 10.4103/2277-9175.201683

[…] inimized by steepest-descent and the conjugate-gradients method. The structure validation was performed by torsion angles analysis of the protein backbone (phi and psi) through PROCHECK software,[] Z-scor, Verify3D, prosaII score, Molprobity.[] […]

call_split

The synthesis of n caproate from lactate: a new efficient process for medium chain carboxylates production

2015
Sci Rep
PMCID: 4585908
PMID: 26403516
DOI: 10.1038/srep14360
call_split See protocol

[…] Samples (50 mL) were withdrawn from the SCOR at days 30 and 90. An equal amount of sample was withdrawn from the BR at the end of the fourth cycle. All of these samples were centrifuged at 10,000 rpm for 10 min, and then pellets were used f […]

call_split

IFACEwat: the interfacial water implemented re ranking algorithm to improve the discrimination of near native structures for protein rigid docking

2014
BMC Bioinformatics
PMCID: 4290663
PMID: 25521441
DOI: 10.1186/1471-2105-15-S16-S9
call_split See protocol

[…] a linear combination of potential scores and derived energies that are involved in the protein-protein and protein-water interactions at the complex interfaces (Equation 1). (1) f = w 1 Scor e IFACE + w 2 E LJ_repulsive + w 3 E water - mediated - Hbond + w 4 Δ G interface in which the ScoreIFACE is derived from […]

library_books

Transcriptome Sequencing and Genome wide Association Analyses Reveal Lysosomal Function and Actin Cytoskeleton Remodeling in Schizophrenia and Bipolar Disorder

2014
Mol Psychiatry
PMCID: 4326626
PMID: 25113377
DOI: 10.1038/mp.2014.82

[…] of raw reads with HiSeq 2000 pipeline (Hiseq version HCS1.0.69). Sequence reads with adaptor contamination, or with more than 5% unscored bases, or with 50% of the bases with low quality score (PHRED scor 5) were removed. The cleaned reads were then aligned and mapped to the human genome reference sequence (UCSC hg18) using the SOAP software., For the alignment and mapping, the maximum of allowabl […]

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