SCPattern specifications


Unique identifier OMICS_11476
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data An estimation of gene expression and a vector that specifies the condition to which each cell belongs.
Output data A list of differentially expressed (DE) genes and their posterior probabilities, the most likely pattern of each DE gene, and violin plots.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Requirements shiny, shinyFiles, devtools
Maintained Yes


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  • person_outline Ron Stewart <>
  • person_outline Ning Leng <>

SCPattern articles

SCPattern institution(s)
Morgridge Institute for Research, Madison, WI, USA; Department of Statistics, University of Wisconsin, Madison, WI, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA
SCPattern funding source(s)
This work was supported by the National Institutes of Health 4UH3TR000506-03, 5U01HL099773-06, GM102756, U54 AI117924, the Charlotte Geyer Foundation, and the Morgridge Institute for Research.

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