scPipe statistics

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Citations per year

Citations chart

Popular tool citations

chevron_left Quality control UMI processing Transcript quantification Read alignment chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

scPipe specifications


Unique identifier OMICS_20342
Name scPipe
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Matthew Ritchie <>
  • person_outline Luyi Tian <>

Publication for scPipe

scPipe institution(s)
Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, VIC, Australia; Department of Medical Biology, The University of Melbourne, Parkville, Melbourne, VIC, Australia; School of Mathematics and Statistics, The University of Melbourne, Parkville, Melbourne, VIC, Australia
scPipe funding source(s)
Supported by the National Health and Medical Research Council (NHMRC), Australia (Fellowship GNT1104924, Project Grant GNT1124812), a Melbourne Research Scholarship, Victorian State Government Operational Infrastructure Support and Australian Government NHMRC IRIISS.

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