scPLS specifications

Information


Unique identifier OMICS_11399
Name scPLS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Mengjie Chen <>

Publication for scPLS

scPLS in publications

 (9)
PMCID: 5939082
PMID: 29678829
DOI: 10.1073/pnas.1719622115

[…] ( and dataset s27). of the wgds and extensive gene duplications in the type 1a scpl gene family that are tea-specific, ∼68% () were generated through tandem duplications, and clustered with three scpls from grape, a species that also produces galloylated catechins. the other seven scpl genes cluster with scpls from other plant species and/or are highly expressed in such tissues as roots […]

PMCID: 5902771
PMID: 29055088
DOI: 10.1111/pbi.12852

[…] a post‐translational regulatory mechanism. we identified peptides corresponding to six subtilases (one sbt5 and five sbt1 subtilases, including the proteins clustering with tomato p69), seven scpls (two clade ib, three clade ii, four cade iii) and one aleurain‐like plcp with similar abundance in both agro‐ and mock‐infiltrated samples, indicating that activity of these enzymes remains […]

PMCID: 4957776
PMID: 27448032
DOI: 10.1371/journal.pone.0159737

[…] and rice respectively []. by using the same hidden markov models but different criteria, feng et al (2009) identified 54 and 71 scpl genes in arabidopsis and rice. a large number of the arabidopsis scpls showed rich alternative splicing models, while this phenomenon barely occurred in rice scpls []. the arabidopsis scp members displayed divergent spatial-expression patterns though […]

PMCID: 4457719
PMID: 26046530
DOI: 10.1371/journal.pone.0126973

[…] ‘sanhu’ red tangerine roots () included several germin-like proteins and 1 scpl40. germins and germin-like proteins could be induced in the resistance response of plants to bacterial infections []. scpls have recently emerged as a new group of plant acyltransferases that are required for the synthesis of antimicrobial compounds [, ]. the facts that the highest and the second highest […]

PMCID: 3765261
PMID: 24040092
DOI: 10.1371/journal.pone.0073847

[…] was performed at day 3. previous studies conducted using fp-based probes have identified the activities of over 50 arabidopsis serine hydrolases, including subtilases, serine carboxypeptidases (scpls) and prolyl oligopeptidases . in the present study, the major differences detected corresponded to three protein bands observed at approximately 55–70 kda: one was significantly reduced, […]


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scPLS institution(s)
Department of Biostatistics, University of North Carolina, Chapel Hill, NC, USA; Department of Genetics, University of North Carolina, Chapel Hill, NC, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA
scPLS funding source(s)
This work was supported by a start-up fund from the University of North Carolina at Chapel Hill, a start-up fund from the University of Michigan and by the National Institutes of Health (NIH) grants R01 GM105785, R01 CA082659 and P01 CA142538.

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