Scramble specifications


Unique identifier OMICS_04662
Name Scramble
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SAM, BAM, CRAM
Output format SAM, BAM, CRAM
Operating system Unix/Linux
Programming languages C, C++, Fortran
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Maintained Yes


No version available



  • person_outline James Bonfield <>

Publication for Scramble


The Scramble conversion tool.

2014 Bioinformatics
PMCID: 4173023
PMID: 24930138
DOI: 10.1093/bioinformatics/btu390
Scramble institution(s)
DNA Pipelines, Wellcome Trust Sanger Institute, Cambridgeshire, UK
Scramble funding source(s)
This project was funded by the Wellcome Trust (098051).

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