ScripTree specifications

Information


Unique identifier OMICS_08832
Name ScripTree
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Version 17.0
Stability No
Maintained No

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Maintainer


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Information


Unique identifier OMICS_08832
Name ScripTree
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 17.0
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for ScripTree

ScripTree in publications

 (2)
PMCID: 5797428
PMID: 29434576
DOI: 10.3389/fmicb.2018.00028

[…] built using the iq-tree program version 1.5.5 () (model test, partitioned analysis with the best model selected per gene, 1000 uf-boot and 1000 alrt replicates). a tree drawing was obtained with the scriptree program (), and then modified with inkscape., homologous protein families were built for the set of genomes selected. a blast similarity search was performed with all sequences […]

PMCID: 3459982
PMID: 23028376
DOI: 10.1371/journal.pgen.1002983

[…] abundant protein families, considering both replicons and nf-t3ss families, were extracted and hmmer profiles were built from them to extend the search in nf-t3ss neighboring genes., we used the scriptree program to draw annotated trees (; , , ) and figtree (http://tree.bio.ed.ac.uk/software/figtree) to draw trees (, , ). graphics on , , and were drawn with r (http://www.r-project.org). […]


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ScripTree institution(s)
GEMI, IRD/CNRS UMR 2724, Montpellier, France; MAB, LIRMM, CNRS, Université Montpellier, Montpellier, France; CNRS UMR 6543 and Université Nice, Centre de Biochimie Parc Valrose, Nice, France
ScripTree funding source(s)
IRD-SPIRALES 2007; ANR PhylAriane project ANR-08-EMER-011-01; ANR-Biodiversité Aquaparadox project

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