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A method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome to build a transcriptome ab initio. The statistical methods to estimate read coverage significance are also applicable to other sequencing data. Scripture also has modules for ChIP-Seq peak calling.

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Scripture classification

Scripture specifications

Unique identifier:
OMICS_01265
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

Scripture distribution

versioning

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No versioning.

Scripture support

Maintainer

  • Mitchell Guttman <>

Credits

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Publications

Institution(s)

Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Pathology, Beth Israel Deaconess Medical Center, Boston, MA, USA; Department of Systems Biology, Harvard Medical School, Boston, MA, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA, USA

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.