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ScrumPy specifications


Unique identifier OMICS_20375
Name ScrumPy
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained Yes




No version available


  • person_outline M.G. Poolman

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Publication for ScrumPy

ScrumPy citation


Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008

Biotechnol Biofuels
PMCID: 4583153
PMID: 26413158
DOI: 10.1186/s13068-015-0338-4

[…] by rast [] and protein name and ec number matching in metacyc. to reduce complexity, batch reactions for amino acid, nucleotide and lipid biosynthesis were introduced based on metacyc pathways. scrumpy [] was used as modeling tool and to perform flux balance analysis with a dual objective of biomass optimization followed by flux minimization. the solver employed was cplex 12.6 […]

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ScrumPy institution(s)
School of Molecular and Biological Sciences, Oxford Brooks University, Oxford, UK

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